Publications

2025
Wang, N., Pachai, M. R., Li, D., Lee, C. J., Warda, S., Khudoynazarova, M. N., Cho, W. H., Xie, G., Shah, S. R., Yao, L., Qian, C., Wong, E. W. P., Yan, J., Tomas, F. V., Hu, W., Kuo, F., Gao, S. P., Luo, J., Smith, A. E., Han, M., Gao, D., Ge, K., Yu, H., Chandarlapaty, S., Lyer, G.V., Rosenberg, J.E., Solit, D.B., Al-Ahmadie, H.A., Chi, P., and Chen, Y. (2025). Loss of Kmt2c or Kmt2d primes urothelium for tumorigenesis and redistributes KMT2A-menin to bivalent promoters. Nature Genetics.
Main Text Published Version 100 100 100
2023
Chen, Y., Paramo, M. I., Zhang, Y., Yao, L., Shah, S. R., Jin, Y., Zhang, J., Pan, X., & Yu, H. (2023). Finding Needles in the Haystack: Strategies for Uncovering Noncoding Regulatory Variants. Annual Review of Genetics, 1(57), 201-222.
Main Text Published Version 100 100 100
2022
Yao, L., Liang, J., Ozer, A., Leung, A. K.-Y., Lis, J. T., & Yu, H. (2022). A comparison of experimental assays and analytical methods for genome-wide identification of active enhancers. Nature Biotechnology, 40(7), 1056-1065.
Main Text Published Version Supplements 100 100 100
Leung, A. K.-Y., Yao, L., & Yu, H. (2022). Functional genomic assays to annotate enhancer-promoter interactions genome-wide. Human Molecular Genetics, 31(R1), R97-R104.
Main Text Published Version 100 100 100
Hu, X., Zou, Q., Yao, L., & Yang, X. (2022). Survey of the binding preferences of RNA-binding proteins to RNA editing events. Genome Biology, 23(1), 169.
Main Text Published Version Supplements 100 100 100
2019
Yan, R., Li, J., Zhou, Y., Yao, L., Sun, R., Xu, Y., Ge, Y., & An, G. (2020). Inhibition of DCLK1 down-regulates PD-L1 expression through Hippo pathway in human pancreatic cancer. Life Sciences, 241, 117150.
Main Text Published Version 100 100 100
Fragoza, R., Das, J., Wierbowski, S. D., Liang, J., Tran, T. N., Liang, S., Beltran, J. F., Rivera-Erick, C. A., Ye, K., Wang, T.-Y., Yao, L., Mort, M., Stenson, P. D., Cooper, D. N., Wei, X., Keinan, A., Schimenti, J. C., Clark, A. G., & Yu, H. (2019). Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations. Nature Communications, 10(1), 1-15.
Main Text Published Version Supplements 100 100 100
2018
Babaian, A., Ebou, A., Fegen, A., Kam, H. Y., Novakovsky, G. E., Wong, J., Aïssi D., Yao, L. (2018). bioSyntax: syntax highlighting for computational biology. BMC Bioinformatics, 19(1), 303.
Main Text Published Version Supplements 100 100 100
2017
Yao, L., Wang, H., Song, Y., Sui, G. (2017). BioQueue: a novel pipeline framework to accelerate bioinformatics analysis. Bioinformatics, 33(20), 3286-3288.
Main Text Published Version Supplements 100 100 100
Yao, L., Wang, H., Song, Y., Dai, Z., Yu, H., Yin, M., Wang, D., Yang, X., Wang, J., Wang, T., Cao, N., Zhu, J., Shen, X., Song, G., & Zhao, Y. (2019). Large-scale prediction of ADAR-mediated effective human A-to-I RNA editing. Briefings in Bioinformatics, 20(1), 102-109.
Main Text Published Version Supplements 100 100 100
2016
Zhao, Y., Song, Y., Yao, L., Song, G., & Teng, C. (2017). Circulating microRNAs: Promising Biomarkers Involved in Several Cancers and Other Diseases. DNA and Cell Biology, 36(2), 77-94.
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: co-first author : corresponding author

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